mbX Pro is an end-to-end workflow for 16S rRNA amplicon data. It chains together every stage of a modern microbiome study — primer detection, denoising, taxonomy, diversity, differential abundance, functional prediction, machine learning and network analysis — into 19 ordered, reproducible steps.
Each step is documented as its own reference page with copy-ready commands and a companion slide deck, so an analysis runs the same way on any machine and is easy to teach, audit and reuse.
Nineteen steps
A guided path from raw FASTQ to final report — nothing skipped, every decision documented.
Built on QIIME 2
A standalone pipeline tool that wraps QIIME 2 with sensible defaults and clear, copy-ready commands.
Reproducible
Same inputs, same outputs — designed for HPC environments like UGA's Sapelo2.